MmuEX6100993 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39034061-39039135:-
Coord C1 exon
chr2:39039040-39039135
Coord A exon
chr2:39035225-39035320
Coord C2 exon
chr2:39034061-39034210
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCTGTTTCCCCTCAGGTG
3' ss Score
12.47
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AAAACAGTTGCTGAACAGAATCTGGAAGATACTAGGCAGCAGCTCTTGGCTGCCAGGAACAGCCACACCAAGGCACTTTACCTCCTGGAGACTCGG
Seq A exon
GTGAAGGACCTAGAGCGGAGTCTACAGGCTGCTGAAGAACAGCTAAGCCAGAGTAGAAATGTTGTGGCTGACCAGGAAGCCCAGATCCAGAAGCTT
Seq C2 exon
ATCACTACAAACCAGGAGAACAGCCTTTCCCAGCAGCAGGTTCTTGCCCTGGAACAGCATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGTAGCTGACCAGATAGCCTCAGAGCAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.125 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTTTACCTCCTGGAGA
R:
CCTGCTCTGAGGCTATCTGGT
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types