HsaEX0027937 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124899329-124908472:-
Coord C1 exon
chr9:124908377-124908472
Coord A exon
chr9:124900452-124900547
Coord C2 exon
chr9:124899329-124899478
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCTTCCCTCTCAGGTG
3' ss Score
10.75
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTCGG
Seq A exon
GTGAGAGAACTGGAGCAGACCTTGCAGGCCTCTGAGGAGCAGCTCCAACAGAGCAAGGGCATTGTGGCTGCCCAGGAAACTCAGATACAGGAGCTC
Seq C2 exon
GCTGCCGCCAACCAGGAGAGCAGCCATGTGCAGCAGCAGGCCCTTGCTCTGGAGCAGCAGTTCTTGGAGCGCACCCAGGCGCTAGAAGCCCAGATAGTGGCCCTGGAGAGAACGCGGGCAGCTGACCAGACCACCGCAGAGCAAGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935_MULTIEX3-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.245 C2=0.372
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PD(18.7=71.9),PF045827=Reo_sigmaC=FE(20.8=100)
A:
NO
C2:
PF045827=Reo_sigmaC=PD(6.7=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACAACAGCTCTTGGCAG
R:
CGTTCTCTCCAGGGCCACTAT
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development