HsaEX0027947 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124900452-124912026:-
Coord C1 exon
chr9:124911901-124912026
Coord A exon
chr9:124908377-124908472
Coord C2 exon
chr9:124900452-124900547
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCTTTCAACTTACAGAAA
3' ss Score
9.75
5' ss Seq
CGGGTACTG
5' ss Score
5.43
Exon sequences
Seq C1 exon
GTCACTGCTGAAACTCAAGAGAAAGAAGACGTTATCACACATTTGCAAGAGAAGGTTGCATCCTTGGAGAAGAGACTAGAACAGAACTTATCAGGAGAAGAACACTTGCAAGAACTCCTGAAAGAG
Seq A exon
AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTCGG
Seq C2 exon
GTGAGAGAACTGGAGCAGACCTTGCAGGCCTCTGAGGAGCAGCTCCAACAGAGCAAGGGCATTGTGGCTGCCCAGGAAACTCAGATACAGGAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935_MULTIEX3-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=0.306 C2=0.245
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=FE(33.3=100),PF045827=Reo_sigmaC=FE(27.5=100),PF048597=DUF641=PD(38.0=83.3)
A:
PF104734=CENP-F_leu_zip=PD(18.7=71.9),PF045827=Reo_sigmaC=FE(20.8=100)
C2:
NO
Main Skipping Isoform:
ENST00000373555fB16471
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGTTGCATCCTTGGAG
R:
GTATCTGAGTTTCCTGGGCAGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development