BtaEX0015976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95883034-95890196:-
Coord C1 exon
chr11:95890071-95890196
Coord A exon
chr11:95885678-95885773
Coord C2 exon
chr11:95883034-95883129
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTTTCAACTTACAGAAA
3' ss Score
10.37
5' ss Seq
CGGGTACTA
5' ss Score
4.01
Exon sequences
Seq C1 exon
GTCACTGCTGAAACTCAAGAGAAAGAAAAACTCATCACACATTTGCAGGAGAAGGTCGCATCCCTGGAGAAGAGACTAGAGCAGAATCTCTCAGGAGAAGAACATGTGCAGGAACTTCTGAAAGAG
Seq A exon
AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAGCAGCTCTTGGCAGCCAGAAGCAGCCAGGCCAAGGCCATCAACAACCTGGAGACTCGG
Seq C2 exon
GTGAAAGAACTAGAGCAGAGCCTGCAGGCCTCTGAGGAGGAGCTGAAGCGGAGCGGTGACGTGGTGGCAGCTCGGGAAGCTCAAATTCGAGAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.438 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGGAGAAGGTCGCATC
R:
TCTCGAATTTGAGCTTCCCGA
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development