RnoEX0039153 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23327420-23331418:-
Coord C1 exon
chr3:23331293-23331418
Coord A exon
chr3:23329133-23329228
Coord C2 exon
chr3:23327420-23327515
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTATCTTTTAAATTACAGAAA
3' ss Score
7.05
5' ss Seq
CGGGTACTG
5' ss Score
5.43
Exon sequences
Seq C1 exon
GTCAATGCTGAAACTCAAGAAAAAGAAAAAGTCATCACACATTTACAAGACAAGGTTACATTCTTGGAAAAGAGACTAGAACAGGACTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
Seq A exon
AAAACTGTGGCTGAACAGAAACTGCAGGATACTAGGCAACAGCTCTTGGCTGCCAAGAACAGCCACACCAAGGCAGTTGACCTCCTGGAGACTCGG
Seq C2 exon
GTGAAGGACCTAGAGCAGAGCCTACAGGCTGCTGAAGAGCAGCTAAGCCAGAGTAGAGATGTTGTGGCTGGCCAGGAAGCGCAGATCCAGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.188 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGACAAGGTTACATTCTTGGA
R:
AAGCTTCTGGATCTGCGCTTC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]