DreEX6051155 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41477493-41481019:-
Coord C1 exon
chr8:41480894-41481019
Coord A exon
chr8:41478333-41478428
Coord C2 exon
chr8:41477493-41477588
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTGTGTGCATGTAGAAG
3' ss Score
6.19
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTGCGGTGACGGAAGAGGAGCGAGAGCGTATACTGTCTGATCTGCAGGAGAAAGCCGCCTCTTTAGAAAGGAGACTAGAAGCAAACTTCTCTCAGGATGAACACTTACAGGAACTGCTCAAAGAG
Seq A exon
AAGTCTTCCTTGGAGCAAAGGTTAGAGGAGGCCAGAGGAGAGTTACTGCAGGAGAAAACCAGTCACACTACAGCAGTCAGTTCACTGGAGGCACAG
Seq C2 exon
GTCTCTCGGCAGAATGCAAGCATAACAGATCTGCAGACTCTGGTCAAACACAAAGACGACTCGTCCAAAGCTTACAGAGAAAGAACAGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979-'14-17,'14-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.938 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCTGCAGGAGAAAGCCG
R:
TCTGTAAGCTTTGGACGAGTCG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]