HsaEX0027947 @ hg19

Exon Skipping

Gene

ENSG00000136935 | GOLGA1

Description

golgin A1 [Source:HGNC Symbol;Acc:4424]

Coordinates

chr9:127662731-127674305:-

Coord C1 exon

chr9:127674180-127674305

Coord A exon

chr9:127670656-127670751

Coord C2 exon

chr9:127662731-127662826

Length

96 bp

Sequences

Splice sites

3' ss Seq

ACTCTTCTTTCAACTTACAGAAA

3' ss Score

9.75

5' ss Seq

CGGGTACTG

5' ss Score

5.43

Exon sequences

Seq C1 exon

GTCACTGCTGAAACTCAAGAGAAAGAAGACGTTATCACACATTTGCAAGAGAAGGTTGCATCCTTGGAGAAGAGACTAGAACAGAACTTATCAGGAGAAGAACACTTGCAAGAACTCCTGAAAGAG

Seq A exon

AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTCGG

Seq C2 exon

GTGAGAGAACTGGAGCAGACCTTGCAGGCCTCTGAGGAGCAGCTCCAACAGAGCAAGGGCATTGTGGCTGCCCAGGAAACTCAGATACAGGAGCTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136935_MULTIEX1-4/4=3-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.510 A=0.239 C2=0.174

Domain overlap (PFAM):

C1:

PF104734=CENP-F_leu_zip=FE(33.3=100),PF078886=CALCOCO1=FE(28.1=100),PF0157614=Myosin_tail_1=FE(29.3=100),PF083176=Spc7=FE(27.3=100),PF048597=DUF641=PD(38.0=83.3),PF045827=Reo_sigmaC=FE(27.5=100),PF0192313=Cob_adeno_trans=FE(35.0=100)

A:

PF104734=CENP-F_leu_zip=PD(18.7=71.9),PF078886=CALCOCO1=FE(21.2=100),PF0157614=Myosin_tail_1=FE(22.1=100),PF083176=Spc7=FE(20.7=100),PF045827=Reo_sigmaC=FE(20.8=100),PF0192313=Cob_adeno_trans=FE(26.5=100)

C2:

NO

Main Inclusion Isoform:

ENSP00000362656