GgaEX6015632 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9569281-9570546:+
Coord C1 exon
chr17:9569281-9569406
Coord A exon
chr17:9570109-9570204
Coord C2 exon
chr17:9570443-9570546
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAACCCAATATAATCTTCAGAAA
3' ss Score
3.7
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGACTTTTGAATTTGCTGAGAGAAGTAAACTTATTGAACAGTTGCAGGAAAAAGTGTCTTCCTTGGAAAAGAAGTTAGAAAGAAATCTTTCAGGGGATGAACATGTACAGGAACTGCTCAAGGAG
Seq A exon
AAAGCTTCTCTTGAGCAGAAACTAGATGAAACCAGTCAACAGATATTAACAGACAGAATGCATCATGCTAATGGCATGAACCAGTTAGAAACACAG
Seq C2 exon
CCTAAGAAACAAGTAGCTAAATTGAAAGCATTGCTGAGCAAGGTCTGGAATGATGAAGAGTATTTAAAGAAAACAGTACATGTCGAGCAGACATGCTCTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'16-21,'16-16,17-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.781 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAAAAGTGTCTTCCTTGG
R:
GTCTGCTCGACATGTACTGTT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]