GgaEX6015632 @ galGal3
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10290274-10291761:+
Coord C1 exon
chr17:10290274-10290399
Coord A exon
chr17:10291102-10291197
Coord C2 exon
chr17:10291666-10291761
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAACCCAATATAATCTTCAGAAA
3' ss Score
3.7
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGACTTTTGAATTTGCTGAGAGAAGTAAACTTATTGAACAGTTGCAGGAAAAAGTGTCTTCCTTGGAAAAGAAGTTAGAAAGAAATCTTTCAGGGGATGAACATGTACAGGAACTGCTCAAGGAG
Seq A exon
AAAGCTTCTCTTGAGCAGAAACTAGATGAAACCAGTCAACAGATATTAACAGACAGAATGCATCATGCTAATGGCATGAACCAGTTAGAAACACAG
Seq C2 exon
AATAGAGAACTGGAAGAGAAACTACAGATTGCAACAGAAGCATTGAAAATGAGCAAAGAGGCAGCCTCTGAGCAGGATTTGAAGATCCAGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.875 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAGGAAAAAGTGTCTTCCT
R:
CAAATCCTGCTCAGAGGCTGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]