MmuEX6100992 @ mm9
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38890745-38896872:-
Coord C1 exon
chr2:38896747-38896872
Coord A exon
chr2:38894560-38894655
Coord C2 exon
chr2:38890745-38890840
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTTTAAATTACAGAAA
3' ss Score
7.1
5' ss Seq
CGGGTACTG
5' ss Score
5.43
Exon sequences
Seq C1 exon
GTCACTGCTGAAACGCAAGAAAAAGAAAAAGTCATCACACATCTACAAGAGAAGGTTATATTCTTGGAAAAGAGACTAGAACAGAATTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
Seq A exon
AAAACAGTTGCTGAACAGAATCTGGAAGATACTAGGCAGCAGCTCTTGGCTGCCAGGAACAGCCACACCAAGGCACTTTACCTCCTGGAGACTCGG
Seq C2 exon
GTGAAGGACCTAGAGCGGAGTCTACAGGCTGCTGAAGAACAGCTAAGCCAGAGTAGAAATGTTGTGGCTGACCAGGAAGCCCAGATCCAGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.312 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCTGAAACGCAAGAA
R:
TGTTCTTCAGCAGCCTGTAGAC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: