MmuEX6100992 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39035225-39041352:-
Coord C1 exon
chr2:39041227-39041352
Coord A exon
chr2:39039040-39039135
Coord C2 exon
chr2:39035225-39035320
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTTTAAATTACAGAAA
3' ss Score
7.1
5' ss Seq
CGGGTACTG
5' ss Score
5.43
Exon sequences
Seq C1 exon
GTCACTGCTGAAACGCAAGAAAAAGAAAAAGTCATCACACATCTACAAGAGAAGGTTATATTCTTGGAAAAGAGACTAGAACAGAATTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
Seq A exon
AAAACAGTTGCTGAACAGAATCTGGAAGATACTAGGCAGCAGCTCTTGGCTGCCAGGAACAGCCACACCAAGGCACTTTACCTCCTGGAGACTCGG
Seq C2 exon
GTGAAGGACCTAGAGCGGAGTCTACAGGCTGCTGAAGAACAGCTAAGCCAGAGTAGAAATGTTGTGGCTGACCAGGAAGCCCAGATCCAGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'18-23,'18-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.312 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCTGAAACGCAAGAA
R:
TGTTCTTCAGCAGCCTGTAGAC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types