BtaEX6046127 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95882017-95885773:-
Coord C1 exon
chr11:95885678-95885773
Coord A exon
chr11:95883034-95883129
Coord C2 exon
chr11:95882017-95882166
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTGCCTCTTAGGTG
3' ss Score
10.79
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAGCAGCTCTTGGCAGCCAGAAGCAGCCAGGCCAAGGCCATCAACAACCTGGAGACTCGG
Seq A exon
GTGAAAGAACTAGAGCAGAGCCTGCAGGCCTCTGAGGAGGAGCTGAAGCGGAGCGGTGACGTGGTGGCAGCTCGGGAAGCTCAAATTCGAGAGCTC
Seq C2 exon
GCCGCCGCGAACACGGAGAGCAGCCGTGCCCAGCAGCAGGCCCTCGCTCTGGAGCAGCAGCAGGCGGAGCGGATCCACGCGCTGGAGACCCAGCTGGCGGGCCTGGGGAGAGCGCGGGTGGCCGACCTGACAGCCACAGAGCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'15-18,'15-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.490 C2=0.473
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045827=Reo_sigmaC=PU(22.0=72.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCATCAACAACCTGGA
R:
CTCCTGCTCTGTGGCTGTCAG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]