MmuEX6100993 @ mm9
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38889581-38894655:-
Coord C1 exon
chr2:38894560-38894655
Coord A exon
chr2:38890745-38890840
Coord C2 exon
chr2:38889581-38889730
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCTGTTTCCCCTCAGGTG
3' ss Score
12.47
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AAAACAGTTGCTGAACAGAATCTGGAAGATACTAGGCAGCAGCTCTTGGCTGCCAGGAACAGCCACACCAAGGCACTTTACCTCCTGGAGACTCGG
Seq A exon
GTGAAGGACCTAGAGCGGAGTCTACAGGCTGCTGAAGAACAGCTAAGCCAGAGTAGAAATGTTGTGGCTGACCAGGAAGCCCAGATCCAGAAGCTT
Seq C2 exon
ATCACTACAAACCAGGAGAACAGCCTTTCCCAGCAGCAGGTTCTTGCCCTGGAACAGCATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGTAGCTGACCAGATAGCCTCAGAGCAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.125 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTTTACCTCCTGGAGA
R:
CCTGCTCTGAGGCTATCTGGT
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: