GgaEX6017216 @ galGal3
Exon Skipping
Gene
ENSGALG00000002576 | F1NI02_CHICK
Description
NA
Coordinates
chr19:4903836-4904957:-
Coord C1 exon
chr19:4904874-4904957
Coord A exon
chr19:4904497-4904553
Coord C2 exon
chr19:4903836-4903933
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGTTATTCTCTTGTCCTCAGGAG
3' ss Score
8.22
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCTCTGAGGAATGGTCTAAGGGAGTCTTTGTGGTGAAACAAAGTGATGAGGATATTCACACTGCCAATGAACGCAGACTGAAG
Seq A exon
GAGCTGATTGGTGATATAGCTGGAAAGCTGCACACTGGAAGGAGCAGGAATGATCAG
Seq C2 exon
GTTGTGACTGACCTGAAGCTGCTCCTGAAGAGTTCGATCTCTGTCATTTCCACTCACCTGCTGCAGCTCATTAAGACCCTTGTGGAGCGCGCTGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(9.2=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTAAGGGAGTCTTTGTGGT
R:
CTGCAGCAGGTGAGTGGAAAT
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]