DreEX6085296 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31219615-31221413:+
Coord C1 exon
chr21:31219615-31219698
Coord A exon
chr21:31221173-31221229
Coord C2 exon
chr21:31221316-31221413
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCTCTTTTTTAAAGGAA
3' ss Score
9.42
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
Exon sequences
Seq C1 exon
GTTTTGGATGAGTGGTCTAAAGGCGAGTTCGAGATCAAACCAGGTGACGAGGACATTCACACAGCCAATGAACGCAGGCTGAAG
Seq A exon
GAATTGATTGGTGATGCTGCTGGAAAGCTTCATACTGGCAGGAGCAGAAATGATCAG
Seq C2 exon
GTTGCAACTGATATGCGACTCTGGTTACGGGATGGTATTGCCACGCTTAAAGAACTGGCTTTGCAACTCATCAACACTATGGTGGAAAGAGCTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(11.8=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTGACGAGGACATTCA
R:
GCTGCAGCTCTTTCCACCATA
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]