RnoEX0012263 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30170850-30171427:+
Coord C1 exon
chr12:30170850-30170933
Coord A exon
chr12:30171146-30171202
Coord C2 exon
chr12:30171330-30171427
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTATGCCTCTCCATTCCAGGAA
3' ss Score
10.2
5' ss Seq
CAGGTGTCG
5' ss Score
3.7
Exon sequences
Seq C1 exon
GTGGCTGAAGAGTGGGCCCAAGGCATCTTCAAATTGTACCCTAATGATGAAGACATCCACACGGCCAACGAGCGGCGCCTGAAG
Seq A exon
GAACTCATTGGTGAAGCTGCAGGGAAGTTACACACAGGCAGAAGTCGCAATGACCAG
Seq C2 exon
GTGGTCACGGACCTCAGGCTGTGGATGAGGCAAACCTGCTCAAAACTCTCCACCTTCCTCAAGGTGCTCATTGAAGCCATGGTAGACCGGGCAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(9.2=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGACATCCACACGGCC
R:
CTCTGCCCGGTCTACCATGG
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]