BtaEX6110038 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28252885-28253495:-
Coord C1 exon
chr25:28253412-28253495
Coord A exon
chr25:28253088-28253144
Coord C2 exon
chr25:28252885-28252982
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCTCTCCACCCCCAGGAG
3' ss Score
10.86
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTAGCTGAGGAGTGGGCTCAGGGCACCTTCAAACTAAACCCCAATGATGAGGACATCCATACGGCCAATGAGCGGCGTCTGAAG
Seq A exon
GAGCTCATTGGTGAAACCGCGGGGAAGCTGCACACGGGACGAAGTCGGAACGACCAG
Seq C2 exon
GTGGTCACTGACCTCAGGCTGTGGATGCGGCAGAATTGCTCCATGCTCTCAGCCCTCCTCTGCGAACTCATCAGAACCATGGTGGATCGGGCAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(9.2=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTTCAAACTAAACCCCA
R:
TGATGAGTTCGCAGAGGAGGG
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]