GgaEX6017221 @ galGal4
Exon Skipping
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4949675-4950529:-
Coord C1 exon
chr19:4950446-4950529
Coord A exon
chr19:4950038-4950094
Coord C2 exon
chr19:4949675-4949772
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGTTATTCTCTTGTCCTCAGGAG
3' ss Score
8.22
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATCTCTGAGGAATCATCTAAGGGAGTCCTTGTAATGACCCAAAGTGATGAAGATATCCAGACTGCCATTGAACGCAGACTGAAG
Seq A exon
GAGCTGATTGGGGATATAGCTGGAAAGCTGCAGACTGGAAGAAGCAGGAATGAACAG
Seq C2 exon
GTTGTGACTGATCTGAAACTGCTCCTGAAGAGTTCCATCTCTGTCATCTCCACTCACCTGCTGCAGCTCATCAAGACCCTGGTGGAGCGCGCTGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(9.2=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGTCCTTGTAATGACCCA
R:
CAGGGTCTTGATGAGCTGCAG
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]