GgaEX6017221 @ galGal3
Exon Skipping
Gene
ENSGALG00000002558 | ARLY1_CHICK
Description
NA
Coordinates
chr19:4916436-4917290:-
Coord C1 exon
chr19:4917207-4917290
Coord A exon
chr19:4916799-4916855
Coord C2 exon
chr19:4916436-4916533
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGTTATTCTCTTGTCCTCAGGAG
3' ss Score
8.22
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATCTCTGAGGAATCATCTAAGGGAGTCCTTGTAATGACCCAAAGTGATGAAGATATCCAGACTGCCATTGAACGCAGACTGAAG
Seq A exon
GAGCTGATTGGGGATATAGCTGGAAAGCTGCAGACTGGAAGAAGCAGGAATGAACAG
Seq C2 exon
GTTGTGACTGATCTGAAACTGCTCCTGAAGAGTTCCATCTCTGTCATCTCCACTCACCTGCTGCAGCTCATCAAGACCCTGGTGGAGCGCGCTGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(9.2=100),PF0270212=KdpD=FE(21.6=100)
A:
PF0020615=Lyase_1=FE(6.1=100),PF0270212=KdpD=FE(14.4=100)
C2:
PF0020615=Lyase_1=FE(10.8=100),PF0270212=KdpD=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGTCCTTGTAATGACCCA
R:
CAGGGTCTTGATGAGCTGCAG
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]