MmuEX6021312 @ mm9
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130494180-130494786:-
Coord C1 exon
chr5:130494703-130494786
Coord A exon
chr5:130494418-130494474
Coord C2 exon
chr5:130494180-130494277
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCATGCCTCTTCACTCCAGGAA
3' ss Score
8.6
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
Exon sequences
Seq C1 exon
GTTGCTGAAGAGTGGGCCCAAGGCACCTTCAAATTACATCCTAATGATGAAGACATCCACACAGCCAACGAGCGGCGCCTGAAG
Seq A exon
GAACTCATCGGTGAAGCTGCAGGGAAGCTACACACAGGACGAAGTCGCAACGACCAG
Seq C2 exon
GTGGTCACGGACCTCAGGCTGTGGATGAGGCAGACCTGCTCAAAACTCTCCGCCCTCCTCCGGGTGCTCATTGGAACCATGGTCGACCGGGCAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'8-16,'8-15,9-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(16.4=100)
A:
PF0020615=Lyase_1=FE(10.9=100)
C2:
PF0020615=Lyase_1=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAAGAGTGGGCCCAAG
R:
GCGGAGAGTTTTGAGCAGGTC
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: