GgaEX6019355 @ galGal3
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
NA
Coordinates
chr2:35614191-35621488:+
Coord C1 exon
chr2:35614191-35614390
Coord A exon
chr2:35616340-35616589
Coord C2 exon
chr2:35621274-35621488
Length
250 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTTTTTTGACAGCTT
3' ss Score
9.89
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
CTCTGATGCATGCCTTGGTGTTTGGTAATGTGACTGCCATAATTCAGAGGATGTACTCCAGATGGTCCCTTTATCACACAAGAACCAAGGATCTGAAGGACTTTATACGGGTCCACCACCTGCCACAGCAGCTAAAGCAAAGGATGCTTGAATATTTCCAAACCACATGGTCTGTCAACAATGGAATTGATTCCAATGAG
Seq A exon
CTTTTAAAAGATTTCCCAGATGAGCTACGTTCAGACATCACCATGCACTTGAACAAAGAGATTTTGCAGCTCTCCCTTTTTGAGTGTGCCAGCCGTGGTTGCCTCAGGTCTCTGTCTCTGCATATCAAAACCTCCTTCTGTGCTCCTGGGGAATACCTCCTCCGGCAGGGAGATGCCCTGCAAGCGATATACTTTGTGTGCTCAGGTTCCATGGAAGTCCTAAAGGACAGCACAGTGCTGGCAATTCTTG
Seq C2 exon
GTAAAGGAGATTTAATTGGAGCAAACCTATCCATTAGGGATCAAGTCATTAAAACAAATGCAGATGTTAAAGCTCTAACTTACTGTGACCTCCAATGCATTATCCTCAAAGGCCTCTTTGAAGTACTTGATCTTTACCCAGAGTATGCTCACAAGTTTGTTGAAGACATACAGCATGATCTCACTTACAATTTAAGAGAAGGCCATGAAAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGCAGCTAAAGCAAAG
R:
GTCGCTTTCATGGCCTTCTCT
Band lengths:
294-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]