BtaEX6003560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012798 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr1:138582405-138590674:+
Coord C1 exon
chr1:138582405-138582604
Coord A exon
chr1:138583464-138583713
Coord C2 exon
chr1:138590460-138590674
Length
250 bp
Sequences
Splice sites
3' ss Seq
TCTTTCATCTTCTCTGGCAGCTT
3' ss Score
9.4
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CCTTGATGCACGCCCTGGTGTTCGGAAACGTGACAGCGATCATCCAGAGGATGTACTCCAGGTGGTCCCTCTATCACAGCAGAACCAAGGATCTGAAGGACTTCATCCGTGTCCATCACCTGCCCCAGCAGCTCAAGCAGAGGATGCTGGAGTATTTCCAGACAACCTGGTCAGTCAACAATGGAATAGATTCCAATGAG
Seq A exon
CTTTTGAAGGACTTCCCAGACGAGCTCCGCTCCGACATCACCATGCACCTGAACAAGGAGATCTTGCAGCTGTCCCTGTTCGAGTGTGCCAGCCGGGGCTGCCTGCGGTCTCTGTCTCTGCACATCAAAACCTCCTTCTGCGCCCCTGGGGAGTACCTGCTGCGCCAGGGGGACGCTTTGCAGGCCATCTACTTCGTGTGCTCGGGCTCCATGGAGGTTCTTAAAGACAGCACGGTGCTGGCCATCCTCG
Seq C2 exon
GGAAAGGGGATTTAATTGGAGCCAATCTATCAATTAAGGACCAAGTAATCAAGACCAACGCGGATGTGAAGGCGCTAACCTACTGTGATCTCCAGTGTATCATCCTCAAAGGACTCTTTGAAGTTCTGGACCTTTACCCAGAATATGCTCACAAATTTGTGGAAGACATTCAGCATGACCTCACATACAACCTTCGAGAAGGTCACGAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012798-'14-19,'14-17,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACAGCGATCATCCAGAG
R:
GGTCCAGAACTTCAAAGAGTCCT
Band lengths:
304-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]