MmuEX6078355 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52893915-52905215:+
Coord C1 exon
chr17:52893915-52894114
Coord A exon
chr17:52898454-52898703
Coord C2 exon
chr17:52905001-52905215
Length
250 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTCTTTCCCACCAGCTT
3' ss Score
10.1
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CCCTGATGCATGCCTTAGTATTTGGGAACGTGACTGCCATCATACAGAGAATGTACTCTAGATGGAGCCTGTACCACACTAGAACCAAGGACCTAAAAGACTTCATCCGTGTGCACCACCTGCCCCAGCAACTCAAGCAGAGGATGCTCGAGTACTTTCAGACAACTTGGTCAGTCAACAATGGGATAGATTCAAATGAG
Seq A exon
CTTTTAAAAGACTTTCCAGATGAGCTGCGCTCTGACATCACAATGCATCTGAACAAGGAGATCTTACAGCTGTCCCTGTTCGAATGTGCCAGCCGGGGCTGCCTCAGGTCTCTGTCTCTCCATATTAAAACCTCCTTTTGTGCTCCAGGAGAGTATCTGCTGCGCCAGGGGGATGCTTTGCAGGCCATCTACTTCGTGTGCTCAGGCTCTATGGAAGTTCTTAAAGACAGCATGGTGTTGGCTATTCTAG
Seq C2 exon
GGAAGGGAGATTTAATTGGAGCAAATTTATCAATTAAAGACCAAGTGATCAAGACCAACGCTGATGTGAAGGCGCTGACCTACTGTGATCTACAGTGCATCATCCTGAAAGGTCTCTTTGAGGTGCTGGGCCTTTACCCAGAGTATGCACACAAATTCGTAGAAGACATCCAGCACGACCTCACATACAACCTTCGAGAAGGTCATGAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTTCATCCGTGTGCACC
R:
TGTATGTGAGGTCGTGCTGGA
Band lengths:
293-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types