RnoEX6038441 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3294427-3302525:-
Coord C1 exon
chr9:3302326-3302525
Coord A exon
chr9:3300737-3300986
Coord C2 exon
chr9:3294427-3294641
Length
250 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCTCTTTCCCAACAGCTT
3' ss Score
11.98
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CCCTGATGCATGCCTTGGTATTTGGGAATGTGACTGCCATCATACAGAGAATGTACTCTAGATGGAGCCTGTACCATACTAGAACCAAGGACCTAAAGGACTTCATCCGTGTGCATCACCTGCCCCAGCAACTCAAGCAGAGGATGCTTGAGTACTTTCAGACAACTTGGTCTGTCAACAATGGAATAGATTCAAATGAG
Seq A exon
CTTTTGAAAGACTTTCCAGATGAGCTGCGCTCTGACATCACGATGCATCTGAACAAGGAGATCTTACAGCTGTCCCTGTTTGAATGTGCTAGCCGGGGCTGCCTCAGGTCTCTGTCTCTCCATATTAAAACCTCATTCTGTGCCCCAGGAGAGTATCTGCTGCGCCAGGGAGATGCGTTGCAGGCCATCTACTTCGTGTGCTCAGGCTCTATGGAGGTTCTTAAAGACAGCATGGTGTTGGCTATTCTAG
Seq C2 exon
GGAAGGGGGATTTAATTGGAGCAAATTTATCAATTAAAGACCAAGTGATCAAGACCAACGCTGACGTGAAGGCTCTGACCTACTGTGATCTACAGTGCATCATCCTGAAAGGTCTCTTTGAGGTGCTGGGCCTTTACCCAGAGTACGCACACAAATTCGTAGAAGACATCCAGCACGACCTCACATACAACCTTCGAGAAGGTCATGAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCATCCGTGTGCATCA
R:
TGTATGTGAGGTCGTGCTGGA
Band lengths:
292-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]