GgaEX6019675 @ galGal4
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
catenin beta-1 [Source:RefSeq peptide;Acc:NP_990412]
Coordinates
chr2:44044334-44046119:+
Coord C1 exon
chr2:44044334-44044484
Coord A exon
chr2:44044577-44044698
Coord C2 exon
chr2:44046059-44046119
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTTTTAATAGCAA
3' ss Score
7.97
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTGTTGTACTCCCCCATTGAGAATATCCAGAGAGTAGCTGCGGGTGTACTTTGTGAACTTGCTCAAGACAAGGAAGCAGCTGAAGCAATTGAAGCTGAAGGCGCAACTGCCCCTTTAACAGAACTGCTTCATTCCAGGAATGAGGGTGTTG
Seq A exon
CAACATATGCAGCTGCAGTGCTGTTCAGAATGTCGGAGGACAAACCACAAGACTACAAGAAGCGACTTTCAGTTGAACTGACAAGCTCTCTGTTCCGGACTGAGCCAATGGCTTGGAACGAG
Seq C2 exon
ACAGCGGATCTTGGACTTGACATTGGTGCCCAGGGAGAACCTCTTGGATACCGCCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'29-33,'29-31,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.024 C2=0.762
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(51.2=41.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTACTCCCCCATTGAGA
R:
ATCTGGGCGGTATCCAAGAGG
Band lengths:
210-332
Functional annotations
There are 1 annotated functions for this event
PMID: 16476742
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001503; ELM sequence: KRLSVEL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]