MmuEX6069904 @ mm9
Exon Skipping
Gene
ENSMUSG00000006932 | Ctnnb1
Description
catenin (cadherin associated protein), beta 1 [Source:MGI Symbol;Acc:MGI:88276]
Coordinates
chr9:120866635-120867770:+
Coord C1 exon
chr9:120866635-120866785
Coord A exon
chr9:120866877-120866998
Coord C2 exon
chr9:120867710-120867770
Length
122 bp
Sequences
Splice sites
3' ss Seq
AGTTTCTTTTTTTATTCCAGCAA
3' ss Score
7.1
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTGCTTTATTCTCCCATTGAAAATATCCAAAGAGTAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAGGCTGCAGAGGCCATTGAAGCTGAGGGAGCCACAGCTCCCCTGACAGAGTTACTCCACTCCAGGAATGAAGGCGTGG
Seq A exon
CAACATACGCAGCTGCTGTCCTATTCCGAATGTCTGAGGACAAGCCACAGGATTACAAGAAGCGGCTTTCAGTCGAGCTGACCAGTTCCCTCTTCAGGACAGAGCCAATGGCTTGGAATGAG
Seq C2 exon
ACTGCAGATCTTGGACTGGACATTGGTGCCCAGGGAGAAGCCCTTGGATATCGCCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006932-'29-32,'29-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.012 C2=0.195
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(51.2=41.2),PF0051418=Arm=PU(68.3=54.9)
A:
PF0051418=Arm=PD(29.3=29.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCATTGAAAATATCCAAAGAGT
R:
CATCCTGGCGATATCCAAGGG
Band lengths:
203-325
Functional annotations
There are 1 annotated functions for this event
PMID: 16476742
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001503; ELM sequence: KRLSVEL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: