GgaEX6022193 @ galGal3
Exon Skipping
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142433254-142436241:+
Coord C1 exon
chr2:142433254-142433334
Coord A exon
chr2:142434118-142434260
Coord C2 exon
chr2:142436112-142436241
Length
143 bp
Sequences
Splice sites
3' ss Seq
AAAATTACTTCTGGCTTTAGTTT
3' ss Score
4.43
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
TTGTGGGAACTACTGCAATACCTACCACCGTCACTACTACAACTACTACCACTGCAACGACTCCTAAGCCCACCATAGCAG
Seq A exon
TTTTTCGAACAGGAGTCAGAAATCTTGTTATAGATGATGAAACAACCTCAAGTCTGAGGGTGGTGTGGGACATTTCAGATCACAATGCTCAGCAGTTCAGAGTGACCTATCTCACAGCCAAAGGTGACCGTGCCGAGGAAGCG
Seq C2 exon
ATAATGGTGCCTGGGAGACAGAACACTCTTCTGCTTCAGCCTCTGCTACCCGATACGGAATATAAAGTTACAATTACTCCAATCTATGCTGATGGTGAGGGAGTCAGTGTCTCAGCTCCTGGCAAAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'17-24,'17-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
PF0004116=fn3=PU(68.3=97.7)
C2:
PF0004116=fn3=PD(41.7=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAACTACTGCAATACCT
R:
ACGTTTTGCCAGGAGCTGAG
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]