MmuEX6053662 @ mm9
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55241732-55250372:+
Coord C1 exon
chr15:55241732-55241791
Coord A exon
chr15:55243125-55243267
Coord C2 exon
chr15:55250243-55250372
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGGTTCTATTTGTTCCAGTTC
3' ss Score
8.13
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
TTGATGATTTTTGGACTGAAGCACCCACAGCCATAGAACCTACCAGCCCTGTGACTTCAG
Seq A exon
TTCTCCAGACAGGAATCAGAAACCTGGTTGTAGATGACGAAACTGCTACTAGCCTGCGGGTATCGTGGGACATTTCTGACAGCAATGTGGAGCAGTTTAGGGTGACCTACCTGAAAGCCCAAGGGGACCCTATGGAAGAAGTG
Seq C2 exon
GTTATGGTGCCTGGAGTGCAAAACAGTCTCCTTCTGAAGGCTCTACTTCCAGACACTGAGTATAAAGTCACAGTAACCCCTGTCTATACTGTTGGAGAAGGCGTCAGCGTCTCCGCTCCAGGGAAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.037 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(54.3=91.7)
C2:
PF0004116=fn3=PD(41.7=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTTTGGACTGAAGCACCCA
R:
AAGTCTTCCCTGGAGCGGAG
Band lengths:
186-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: