RnoEX6032271 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95153507-95160792:+
Coord C1 exon
chr7:95153507-95153566
Coord A exon
chr7:95154929-95155071
Coord C2 exon
chr7:95160663-95160792
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGGTTCTATTTATTCCAGTTC
3' ss Score
7.69
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
TTGATGATTTTTGGACTGAAGCACCCACAACTGTAGAACCGACCAGCCCCGTGACTTCAG
Seq A exon
TTCTCCAGACAGGAATCAGAAACCTGGTTGTAGATGATGAAGCTGCTACTAGCCTGCGGGTCACATGGGACATTTCTGACAGCAATGTGGAGCACTTTAGGGTGACCTACCTGACAGCCCAAGGGGACCCTAAGGAAGAAGTG
Seq C2 exon
GTTATGGTGCCTGGAGTGCAGAACAGTCTCCTTCTGAAAAATCTACTTCCAGACACAGAGTATAAAGTCACGGTGACACCCATCTACACTGTTGGAGAAGGCGTCAGCGTCTCTGCTCCTGGGAAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.042 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(54.3=91.7)
C2:
PF0004116=fn3=PD(43.2=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTTTGGACTGAAGCACCCA
R:
AAGTCTTCCCAGGAGCAGAGA
Band lengths:
186-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]