GgaEX6022193 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136423711-136426698:+
Coord C1 exon
chr2:136423711-136423791
Coord A exon
chr2:136424575-136424717
Coord C2 exon
chr2:136426569-136426698
Length
143 bp
Sequences
Splice sites
3' ss Seq
AAAATTACTTCTGGCTTTAGTTT
3' ss Score
4.43
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
TTGTGGGAACTACTGCAATACCTACCACCGTCACTACTACAACTACTACCACTGCAACGACTCCTAAGCCCACCATAGCAG
Seq A exon
TTTTTCGAACAGGAGTCAGAAATCTTGTTATAGATGATGAAACAACCTCAAGTCTGAGGGTGGTGTGGGACATTTCAGATCACAATGCTCAGCAGTTCAGAGTGACCTATCTCACAGCCAAAGGTGACCGTGCCGAGGAAGCG
Seq C2 exon
ATAATGGTGCCTGGGAGACAGAACACTCTTCTGCTTCAGCCTCTGCTACCCGATACGGAATATAAAGTTACAATTACTCCAATCTATGCTGATGGTGAGGGAGTCAGTGTCTCAGCTCCTGGCAAAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'25-33,'25-32,26-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(54.3=91.7)
C2:
PF0004116=fn3=PD(43.2=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAACTACTGCAATACCT
R:
ACGTTTTGCCAGGAGCTGAG
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]