BtaEX0009583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83970259-83979274:+
Coord C1 exon
chr14:83970259-83970321
Coord A exon
chr14:83972438-83972589
Coord C2 exon
chr14:83979145-83979274
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTGTGTCTATTCCAGTTT
3' ss Score
8.91
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
TTGACAGTTTTTGGACAGAACCACCTACGACCGAAGAAGCCCCTACCAGACCTGTGACATCAG
Seq A exon
TTTTCCGCACCGGAATCAGGAACCTGGTGGTAGATGCTGAGACCACTTCTAGCCTGCGGGTAGCCTGGGACATTTCAGACAGCAGTGTACAGCAGTTCAGGGTGACCTACCTGACTGCTCAAGGGGACCCAGCGGAAGAAGTGCTAGGGACG
Seq C2 exon
ATTATGGTGCCTGGAAGCCAGAACACTCTCCTTCTGAAGAATCTGCTCTCTGAGACTGAGTACAAGGTCACAGTGACGCCCATCTATGATGACGGAGAAGGGGTCAGTGTCTCCGCCCCTGGAAAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.078 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(56.0=92.2)
C2:
PF0004116=fn3=PD(41.7=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTTTGGACAGAACCACCT
R:
TCTTTCCAGGGGCGGAGAC
Band lengths:
187-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development