BtaEX0009582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83968955-83972589:+
Coord C1 exon
chr14:83968955-83969087
Coord A exon
chr14:83970259-83970321
Coord C2 exon
chr14:83972438-83972589
Length
63 bp
Sequences
Splice sites
3' ss Seq
AGTCATGAATACTTTTTTAGTTG
3' ss Score
2.51
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTGTCCTTCAAGAAGACCAAGACTCATATGTTATCGAAGGCCTGGAGCCTGGCACTGAGTATGAAGTCTCCCTGCTGGCTGTACTGGACGATGGGAGTGAGAGTGAGGTTGTGACTGCTGTTGGGACCACAC
Seq A exon
TTGACAGTTTTTGGACAGAACCACCTACGACCGAAGAAGCCCCTACCAGACCTGTGACATCAG
Seq C2 exon
TTTTCCGCACCGGAATCAGGAACCTGGTGGTAGATGCTGAGACCACTTCTAGCCTGCGGGTAGCCTGGGACATTTCAGACAGCAGTGTACAGCAGTTCAGGGTGACCTACCTGACTGCTCAAGGGGACCCAGCGGAAGAAGTGCTAGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.864 C2=0.078
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(56.0=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGGAGTGAGAGTGAGGT
R:
CCCTGAACTGCTGTACACTGC
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development