MmuEX6053663 @ mm10
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55408816-55411721:+
Coord C1 exon
chr15:55408816-55408948
Coord A exon
chr15:55410177-55410236
Coord C2 exon
chr15:55411570-55411721
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTAATGAATTTTCTTTCAGTTG
3' ss Score
6.79
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGACCTCAAAGAAGAACAGGACTCTTATGTTATTGAAGGCCTGGATCCTGGAACCGAGTACGAAGTCTCCCTGTTAGCTGTGCTTGATGACGGAAGCGAGAGTGAGGTGGTGACCGCAGTGGGAACCACAC
Seq A exon
TTGATGATTTTTGGACTGAAGCACCCACAGCCATAGAACCTACCAGCCCTGTGACTTCAG
Seq C2 exon
TTCTCCAGACAGGAATCAGAAACCTGGTTGTAGATGACGAAACTGCTACTAGCCTGCGGGTATCGTGGGACATTTCTGACAGCAATGTGGAGCAGTTTAGGGTGACCTACCTGAAAGCCCAAGGGGACCCTATGGAAGAAGTGGTAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'13-26,'13-22,19-26=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.381 C2=0.062
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(56.0=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGGAACCGAGTACGA
R:
CCGCAGGCTAGTAGCAGTTTC
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types