RnoEX0022852 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95152079-95155071:+
Coord C1 exon
chr7:95152079-95152211
Coord A exon
chr7:95153507-95153566
Coord C2 exon
chr7:95154929-95155071
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGTAATGAATTTTCTTTCAGTTG
3' ss Score
5.43
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGCCCTCAAAGAAGAGCAGGACTCATATGTTGTTGAAGGCCTGGACCCTGGAACTGAGTATGAAGTCTCGCTATTAGCTGTGCTGGATGACGGAAGTGAGAGTGAGGTGGTGACCGCTGTGGGGACCACAC
Seq A exon
TTGATGATTTTTGGACTGAAGCACCCACAACTGTAGAACCGACCAGCCCCGTGACTTCAG
Seq C2 exon
TTCTCCAGACAGGAATCAGAAACCTGGTTGTAGATGATGAAGCTGCTACTAGCCTGCGGGTCACATGGGACATTTCTGACAGCAATGTGGAGCACTTTAGGGTGACCTACCTGACAGCCCAAGGGGACCCTAAGGAAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.667 C2=0.042
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(54.3=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGAGTGAGGTGGTGACC
R:
AGTGCTCCACATTGCTGTCAG
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]