MmuEX6053663 @ mm9
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55240371-55243276:+
Coord C1 exon
chr15:55240371-55240503
Coord A exon
chr15:55241732-55241791
Coord C2 exon
chr15:55243125-55243276
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTAATGAATTTTCTTTCAGTTG
3' ss Score
6.79
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGACCTCAAAGAAGAACAGGACTCTTATGTTATTGAAGGCCTGGATCCTGGAACCGAGTACGAAGTCTCCCTGTTAGCTGTGCTTGATGACGGAAGCGAGAGTGAGGTGGTGACCGCAGTGGGAACCACAC
Seq A exon
TTGATGATTTTTGGACTGAAGCACCCACAGCCATAGAACCTACCAGCCCTGTGACTTCAG
Seq C2 exon
TTCTCCAGACAGGAATCAGAAACCTGGTTGTAGATGACGAAACTGCTACTAGCCTGCGGGTATCGTGGGACATTTCTGACAGCAATGTGGAGCAGTTTAGGGTGACCTACCTGAAAGCCCAAGGGGACCCTATGGAAGAAGTGGTAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.381 C2=0.054
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(56.0=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGGAACCGAGTACGA
R:
CCGCAGGCTAGTAGCAGTTTC
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: