GgaEX6022194 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136421749-136424717:+
Coord C1 exon
chr2:136421749-136421881
Coord A exon
chr2:136423711-136423791
Coord C2 exon
chr2:136424575-136424717
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCTGAGTATTGTTTTTCAGTTG
3' ss Score
5.04
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTGTTTTAAGTGGAGATGCAGACAGTTATGTTATTGAGGGTTTGTTGCCCAACACAGAATATGAAGTTTCTTTGCTGGCAGTTTTTGATGATGAAACCGAAAGTGAAGTTGTTGCTGTTCTTGGAGCTACAA
Seq A exon
TTGTGGGAACTACTGCAATACCTACCACCGTCACTACTACAACTACTACCACTGCAACGACTCCTAAGCCCACCATAGCAG
Seq C2 exon
TTTTTCGAACAGGAGTCAGAAATCTTGTTATAGATGATGAAACAACCTCAAGTCTGAGGGTGGTGTGGGACATTTCAGATCACAATGCTCAGCAGTTCAGAGTGACCTATCTCACAGCCAAAGGTGACCGTGCCGAGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'24-32,'24-31,25-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.607 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(54.3=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTTCTTTGCTGGCAGT
R:
GGTCACTCTGAACTGCTGAGC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]