HsaEX6082146 @ hg38
Exon Skipping
Gene
ENSG00000187955 | COL14A1
Description
collagen type XIV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr8:120227220-120232090:+
Coord C1 exon
chr8:120227220-120227352
Coord A exon
chr8:120228710-120228769
Coord C2 exon
chr8:120231467-120232090
Length
60 bp
Sequences
Splice sites
3' ss Seq
AAGTAATATATTGCTTTTAGTTG
3' ss Score
2.4
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGTCCTGAAAGAAGAGCAGGACTCACATGTTATTGAAGGCCTGGAGCCCGGTACGGAGTATGAAGTTTCACTATTGGCCGTACTTGATGATGGAAGCGAGAGTGAGGTGGTGACTGCTGTCGGGACCACAC
Seq A exon
TTGACAGTTTTTGGACAGAACCAGCTACAACCATAGTGCCTACCACATCTGTGACTTCAG
Seq C2 exon
TTTTCCAGACGGGAATCAGAAACCTAGTTGTAGGTGATGAAACTACTTCTAGCCTGCGGGTAAAATGGGACATTTCTGACAGCGATGTGCAGCAGTTTAGGGTGACCTACATGACAGCTCAAGGGGACCCTGAGGAAGAAGTCATAGGAACGGTCTGTATAAATTCAACTGACTAGAAACTCTGCAGATGTTACTAACACAGCTAATAAGACTGTCTTCGGAGATCAATGCAAACTTTACTGCTCTTTTCTCAGTGACTCTGCCATCTCCAGAAACTAATGTTCTCTGTTAATCTGACTCCACTACTGGCTTCTTAGTGACCTTTATAAATCCAAAACTTGCTCCATGTACAACTTGCTCCAAGTTAATAACCTCTGAACATTGTTTCAAATATTGCTTCTCTTCTGCTGCCTTGCACCTGTTCGAGCACCAAAGTTGGGTCATAAAAGGCCATATGCACTTGTGTCTGTATATATGTATGTATAGACATGTATAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187955-'35-35,'35-34,37-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.216
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(56.0=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAGCGAGAGTGAGGT
R:
ACCCTAAACTGCTGCACATCG
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains