GgaEX6022194 @ galGal3
Exon Skipping
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142431292-142434260:+
Coord C1 exon
chr2:142431292-142431424
Coord A exon
chr2:142433254-142433334
Coord C2 exon
chr2:142434118-142434260
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCTGAGTATTGTTTTTCAGTTG
3' ss Score
5.04
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTGTTTTAAGTGGAGATGCAGACAGTTATGTTATTGAGGGTTTGTTGCCCAACACAGAATATGAAGTTTCTTTGCTGGCAGTTTTTGATGATGAAACCGAAAGTGAAGTTGTTGCTGTTCTTGGAGCTACAA
Seq A exon
TTGTGGGAACTACTGCAATACCTACCACCGTCACTACTACAACTACTACCACTGCAACGACTCCTAAGCCCACCATAGCAG
Seq C2 exon
TTTTTCGAACAGGAGTCAGAAATCTTGTTATAGATGATGAAACAACCTCAAGTCTGAGGGTGGTGTGGGACATTTCAGATCACAATGCTCAGCAGTTCAGAGTGACCTATCTCACAGCCAAAGGTGACCGTGCCGAGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'16-22,'16-20,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NA
C2:
PF0004116=fn3=PU(68.3=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTTCTTTGCTGGCAGT
R:
GGTCACTCTGAACTGCTGAGC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]