HsaEX6082146 @ hg19
Exon Skipping
Gene
ENSG00000187955 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:2191]
Coordinates
chr8:121239459-121244329:+
Coord C1 exon
chr8:121239459-121239591
Coord A exon
chr8:121240949-121241008
Coord C2 exon
chr8:121243706-121244329
Length
60 bp
Sequences
Splice sites
3' ss Seq
AAGTAATATATTGCTTTTAGTTG
3' ss Score
2.4
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGTCCTGAAAGAAGAGCAGGACTCACATGTTATTGAAGGCCTGGAGCCCGGTACGGAGTATGAAGTTTCACTATTGGCCGTACTTGATGATGGAAGCGAGAGTGAGGTGGTGACTGCTGTCGGGACCACAC
Seq A exon
TTGACAGTTTTTGGACAGAACCAGCTACAACCATAGTGCCTACCACATCTGTGACTTCAG
Seq C2 exon
TTTTCCAGACGGGAATCAGAAACCTAGTTGTAGGTGATGAAACTACTTCTAGCCTGCGGGTAAAATGGGACATTTCTGACAGCGATGTGCAGCAGTTTAGGGTGACCTACATGACAGCTCAAGGGGACCCTGAGGAAGAAGTCATAGGAACGGTCTGTATAAATTCAACTGACTAGAAACTCTGCAGATGTTACTAACACAGCTAATAAGACTGTCTTCGGAGATCAATGCAAACTTTACTGCTCTTTTCTCAGTGACTCTGCCATCTCCAGAAACTAATGTTCTCTGTTAATCTGACTCCACTACTGGCTTCTTAGTGACCTTTATAAATCCAAAACTTGCTCCATGTACAACTTGCTCCAAGTTAATAACCTCTGAACATTGTTTCAAATATTGCTTCTCTTCTGCTGCCTTGCACCTGTTCGAGCACCAAAGTTGGGTCATAAAAGGCCATATGCACTTGTGTCTGTATATATGTATGTATAGACATGTATAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187955-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.216
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(56.0=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAGCGAGAGTGAGGT
R:
ACCCTAAACTGCTGCACATCG
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)