HsaEX0016318 @ hg19
Exon Skipping
Gene
ENSG00000187955 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:2191]
Coordinates
chr8:121240949-121256247:+
Coord C1 exon
chr8:121240949-121241008
Coord A exon
chr8:121243706-121243857
Coord C2 exon
chr8:121256118-121256247
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTTGGTTGTGTTTATTCCAGTTT
3' ss Score
7.28
5' ss Seq
ACGGTCTGT
5' ss Score
5.11
Exon sequences
Seq C1 exon
TTGACAGTTTTTGGACAGAACCAGCTACAACCATAGTGCCTACCACATCTGTGACTTCAG
Seq A exon
TTTTCCAGACGGGAATCAGAAACCTAGTTGTAGGTGATGAAACTACTTCTAGCCTGCGGGTAAAATGGGACATTTCTGACAGCGATGTGCAGCAGTTTAGGGTGACCTACATGACAGCTCAAGGGGACCCTGAGGAAGAAGTCATAGGAACG
Seq C2 exon
GTTATGGTGCCTGGAAGCCAGAACAACCTCCTTCTGAAGCCTCTGCTTCCTGATACTGAATACAAAGTCACAGTGACTCCCATCTACACGGATGGCGAAGGCGTCAGCGTCTCCGCTCCTGGAAAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187955-'24-28,'24-27,25-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.201
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(56.0=92.2)
C2:
PF0004116=fn3=PD(41.7=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTTTGGACAGAACCAGCT
R:
GGTTTTTCCAGGAGCGGAGAC
Band lengths:
186-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)