GgaEX6025265 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5665953-5667304:+
Coord C1 exon
chr23:5665953-5666462
Coord A exon
chr23:5666562-5666738
Coord C2 exon
chr23:5667178-5667304
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTGCTCCCTTGCAGTGC
3' ss Score
10.59
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
AGGAGCTGCTGTCCCAGCAGCAGGACATCATCCTGGTGACTCAGGCAGCGCAGGCGTTCCTGGACAAGCATGGCCACAGCCTGCCTGGGGAGGAGAGGGCCCGGCTGCAGGGCGGGCTGGCGGAGCTGAAGGAGCGCTACGCGGCATCCCTGGCGCGTTCCGAGGTGCAGCTGAAGCAAGTGCAAGTGCTGCGGGATGAGCTGCAGAAGTTCTTGCGGGACCACGGGGAGTTCGAGGCGTGGCTGAAGCAAGCAGAGCAGGACCTGGAGGGGATGTGCAAAGGGGACAGCGACCCTGCGTCCCTCCGGCAGCTGCTGCTCCGGCAGGGCAGCTTCTCTGAAGATGTCATCTCCCACAAAGGCGACCTACGCTTCATCACCATGTCGGGTCAGAAGGTGCTGGATGCCGAGGGAGCTGCTGGGGATGCAGGGTCATCTGGGAGCGTGGTAAAGAGCAAGCTGGAGGATGCAAGCCAGCGGTACACCACGCTGCACTCCAAG
Seq A exon
TGCACCAAGCTCGGCTCCCACCTGAGCACCCTGCTGGACCACTACCAGCAGTTCCAGGAGGTGGCAGAGTCTCTCCGGACGTGGCTGGAGGACAGCGAAGCTGCAGTTGGGAAGCTGCTGTCAGAGAGCGTTTCTTCAGATCCCACAGCTCTCCAGGAGCAGCTTGCCAGCGCTGGG
Seq C2 exon
CAGCAGCTGCAGGGAAACCTTGCTGAGCATCAGGTGCCAGTGGAGAAGCTCCAGAAAGCAGCTCGGTCTCTGCTGGAGGTGCAAGGAGAGCCAGCCCCTGACCATGGGCACATTCGGGAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'51-48,'51-47,52-48=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.203 C2=0.767
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(91.8=59.4)
A:
PF0043516=Spectrin=PD(6.4=11.9),PF0043516=Spectrin=PU(41.1=78.0)
C2:
PF0043516=Spectrin=FE(37.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACCATGTCGGGTCAGA
R:
TTGTTTCCCGAATGTGCCCAT
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]