RnoEX0051748 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141140016-141142012:-
Coord C1 exon
chr5:141141494-141142012
Coord A exon
chr5:141140324-141140500
Coord C2 exon
chr5:141140016-141140139
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTTTTTTGGCATAGTGT
3' ss Score
6.86
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGTCTCAGCAGCAGAATTTCATTGTGGCTACCCAGTCAGCTCAGTCCTTCCTGGACCAACACAGTCACAATCTTACACCTGAGGAGCGACAGATGCTTCAGGAGAAGCTAGGTGAGCTTAAGGAGCAATATGCAGCTTCCCTGGCCCAGTCAGAGGCAAAGCTGAGGCAGACGCAGACTCTACGAGATGAACTGCAGAAGTTCCTGCAAGACCACAGGGAATTTGAAAACTGGCTAGAACGATCTGAGAATGAACTGGATGGTATGCATACGGGAGGCAGCAGCCCTGAAGCTCTGAACTCCTTGCTTAAGCGGCAAGGAAGCTTCTCAGAGGATGTCATTTCCCACAAAGGAGACTTGAGATTTGTGACTATCTCAGGACAGAAAGTCTTAGAAACAGAAAACAATTTTGAGGAAGGCCAGGAGCCGTCACCCACCAGAAACTTAGTGAATGAAAAACTGAAGGATGCAACAGAAAGATACACCACTCTCCATTCTAAG
Seq A exon
TGTACACGATTGGGCTCTCACCTGAACATGCTGCTAGGCCAGTATCAGCAATTCCAGAGCAGCGCTGACAGCCTGCAGGCCTGGATGTTGACTTGTGAGGCCAGTGTGGAGAAGCTCCTCTCAGATACTGTTGCCTCTGACCCCGGGATCCTTCAGCAACAGCTCGCAACCACAAAG
Seq C2 exon
CAGTTACAGGAAGAATTGGCTGAACACCAAGTACCTGTAGAAAAGCTTCAAAAAGCAGCTCATGACCTAATGGACATTGAAGGAGAGCCATCCCTGGACTGTACGCCTATTCGAGAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-'72-78,'72-76,73-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=0.034 C2=0.619
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(92.0=60.1)
A:
PF0043516=Spectrin=PD(6.2=11.9),PF0043516=Spectrin=PU(41.4=78.0)
C2:
PF0043516=Spectrin=FE(36.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCTTGCTTAAGCGGCAA
R:
ACAGGTACTTGGTGTTCAGCC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]