GgaEX6029111 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18846458-18848822:+
Coord C1 exon
chr3:18846458-18846522
Coord A exon
chr3:18847654-18847722
Coord C2 exon
chr3:18848744-18848822
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCATTACTTAACATTCCAAGACT
3' ss Score
0.57
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GAAAGGATATAAGAAGTGATGGATTCAACATTAACACTTGCAGGGAGATGATCAGCCTTTTAGAT
Seq A exon
ACTAATGGGACTGGCACCTTGGGACTTATAGAATTCAAGACACTCTGGATGAAGATTCAGATGTATTTG
Seq C2 exon
GCAATCTACAGGAAGGTGGACAGAGACTACTCGGGTACCATTGACTCCCATGAAATGCGAAATGCACTCAGCGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(35.0=100)
A:
PF138331=EF-hand_8=PD(28.3=73.9),PF134051=EF-hand_6=PU(6.1=8.7)
C2:
PF134051=EF-hand_6=FE(78.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATAAGAAGTGATGGATTCAACA
R:
CTGCCTCGCTGAGTGCATTTC
Band lengths:
140-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]