RnoEX6045706 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101037635-101039218:+
Coord C1 exon
chr13:101037635-101037699
Coord A exon
chr13:101038681-101038749
Coord C2 exon
chr13:101039140-101039218
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGACCTTTAACAAACACAGAGT
3' ss Score
2.78
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GAACAGACATGAAATTTGATGGATTCAACATCAACACTTGCAGAGAAATGATCAGCCTGCTGGAT
Seq A exon
AGTGATGGGACAGGAAGCCTGGGACCTATGGAGTTCAAGACTCTCTGGCTGAAGATCCGCACATATCTG
Seq C2 exon
GAGATCTTCCAAGAAATGGACCATAACCATGTAGGGACCATTGAAGCCCATGAGATGAGGACAGCTCTCAAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'23-23,'23-21,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0229611=Alpha_adaptin_C=PU(19.8=82.6),PF134991=EF-hand_7=PU(5.4=21.7)
C2:
PF0229611=Alpha_adaptin_C=FE(27.1=100),PF134991=EF-hand_7=FE(28.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGACATGAAATTTGATGGATTCA
R:
CTGCTTTCTTGAGAGCTGTCCT
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]