HsaEX6036938 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223544772-223549382:-
Coord C1 exon
chr1:223549318-223549382
Coord A exon
chr1:223545231-223545299
Coord C2 exon
chr1:223544772-223544850
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTTTAATGTGCCTAGAGC
3' ss Score
4.85
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GAACAGACATAAAATTCGATGGATTCAACATCAACACTTGCAGGGAAATGATCAGTCTGTTGGAT
Seq A exon
AGCAATGGAACGGGCACTTTGGGGGCGGTGGAATTCAAGACGCTCTGGCTGAAGATTCAGAAGTATCTG
Seq C2 exon
GAGATCTATTGGGAAACTGATTATAACCACTCGGGCACCATCGATGCCCACGAGATGAGGACAGCCCTCAGGAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697_MULTIEX3-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(36.2=100)
A:
PF138331=EF-hand_8=PD(31.0=78.3),PF134991=EF-hand_7=PU(2.2=8.7)
C2:
PF134991=EF-hand_7=FE(28.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACATAAAATTCGATGGATTCA
R:
CCTTCCTGAGGGCTGTCC
Band lengths:
139-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains