MmuEX6029818 @ mm9
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:184554050-184558187:+
Coord C1 exon
chr1:184554050-184554114
Coord A exon
chr1:184557667-184557735
Coord C2 exon
chr1:184558109-184558187
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTAACCTTTAACAAACTTAGGGT
3' ss Score
5.93
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GAACAGACATGAAATTTGACGGATTCAACATCAACACTTGCAGAGAAATGATCAGCCTGCTGGAT
Seq A exon
GGTGATGGGACAGGAAGCCTGCGACCGGTGGAGTTCAAGACTCTCTGGCTGAAGATCTGCAAGTATCTG
Seq C2 exon
GAGATCTACCAAGAAATGGACCACAGCCGTGCAGGGACCATTGATGCTCACGAGATGAGGACAGCTCTCAAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0229611=Alpha_adaptin_C=PU(20.2=82.6),PF134991=EF-hand_7=PU(2.2=8.7)
C2:
PF0229611=Alpha_adaptin_C=FE(27.7=100),PF134991=EF-hand_7=FE(28.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGACATGAAATTTGACGGA
R:
TGCTTTCTTGAGAGCTGTCCT
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: