HsaEX6036938 @ hg19
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:1485]
Coordinates
chr1:223718134-223722745:-
Coord C1 exon
chr1:223722681-223722745
Coord A exon
chr1:223718593-223718661
Coord C2 exon
chr1:223718134-223718212
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTTTAACGTGCCTAGAGC
3' ss Score
5.19
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GAACAGACATAAAATTCGATGGATTCAACATCAACACTTGCAGGGAAATGATCAGTCTGTTGGAT
Seq A exon
AGCAATGGAACGGGCACTTTGGGGGCGGTGGAATTCAAGACGCTCTGGCTGAAGATTCAGAAGTATCTG
Seq C2 exon
GAGATCTATTGGGAAACTGATTATAACCACTCGGGCACCATCGATGCCCACGAGATGAGGACAGCCCTCAGGAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697-'38-38,'38-37,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(31.0=40.9)
A:
PF0003627=EF-hand_1=PD(62.1=78.3),PF134991=EF-hand_7=PU(5.4=21.7)
C2:
PF134991=EF-hand_7=FE(28.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACATAAAATTCGATGGATTCA
R:
CCTTCCTGAGGGCTGTCC
Band lengths:
139-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)