GgaEX6029111 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17069023-17071387:+
Coord C1 exon
chr3:17069023-17069087
Coord A exon
chr3:17070219-17070287
Coord C2 exon
chr3:17071309-17071387
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCATTACTTAACATTCCAAGACT
3' ss Score
0.57
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GAAAGGATATAAGAAGTGATGGATTCAACATTAACACTTGCAGGGAGATGATCAGCCTTTTAGAT
Seq A exon
ACTAATGGGACTGGCACCTTGGGACTTATAGAATTCAAGACACTCTGGATGAAGATTCAGATGTATTTG
Seq C2 exon
GCAATCTACAGGAAGGTGGACAGAGACTACTCGGGTACCATTGACTCCCATGAAATGCGAAATGCACTCAGCGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'22-24,'22-20,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATAAGAAGTGATGGATTCAACA
R:
CTGCCTCGCTGAGTGCATTTC
Band lengths:
140-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]