GgaEX6029342 @ galGal4
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
potassium channel, voltage gated eag related subfamily H, member 1 [Source:HGNC Symbol;Acc:HGNC:6250]
Coordinates
chr3:21680093-21698851:+
Coord C1 exon
chr3:21680093-21680199
Coord A exon
chr3:21690147-21690275
Coord C2 exon
chr3:21698733-21698851
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTGATATGTTTGTTTCCAGGAA
3' ss Score
9.31
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAGCTGACAGACAAAGATACAATTGACAAAGTCCGGCAGACATTTGAGAACTATGAGATGAATTCCTTTGAAATCCTGATGTACAAGAAGAACA
Seq A exon
GAACACCTGTCTGGTTCTTTGTGAAAATTGCTCCAATCCGAAATGAGCAGGATAAAGTGGTTTTATTTCTCTGCACTTTCAATGACATCACGGCTTTCAAGCAGCCCATTGAGGATGATTCATGTAAAG
Seq C2 exon
GTTGGGGAAAGTTTGCTCGCTTGACCCGTGCCCTCACAAGCAGCCGAGGTGTGCTGCAGCAGCTTGCTCCGAGTGTGCAGAAAGGAGAGAATGTTCACAAGCACTCACGACTTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(48.0=100)
A:
PF134261=PAS_9=PD(41.3=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTATGTATGGAGAGCTGACAGACA
R:
CTCAGCAAGTCGTGAGTGCTT
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]