DreEX6099962 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37956136-37958870:+
Coord C1 exon
chr22:37956136-37956242
Coord A exon
chr22:37956326-37956454
Coord C2 exon
chr22:37958752-37958870
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAAAGTTGCTGATATTGCAGGGA
3' ss Score
1.47
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CTTCATGTACGGGGAACTTTCTGACAAAGAAACCAGTGAGAAACTCCGCCAGACCTTCGAGAACTACGAGATGAACTCCTTTGAGTTACTGATGTACAAGAAGAACC
Seq A exon
GGATGCCAGTGTGGTTCTTCGTCAAAATCGCTCCCATCCGAAACGAACAGGACAAAGTTGTGCTTTTCCTCTGCACCTTCAGCGACATCACTGCCTTCAAGCAGCCAATTGAAGACGACTCCTCTAAAG
Seq C2 exon
GCTGGGGGAAGTTTGCTCGCCTGACACGGGCGCTGACCAGCAGTCGTGGTGTTTTACAGCAGCTGGCGCCGACTGTCCAACGGGGAGAAAACGTGCTTAAACACTCACGTCTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(34.0=100)
A:
PF134261=PAS_9=PD(29.2=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGGGGAACTTTCTGACA
R:
ACGTGAGTGTTTAAGCACGTT
Band lengths:
212-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]